Program for stream OR in Computational Biology, Bioinformatics and Medicine

MA-37: OR for DNA sequences
Stream: OR in Computational Biology, Bioinformatics and Medicine
Room: Virtual Room 37
Chair(s): Artur Laskowski

• Alignment-free sequence comparison: A systematic approach from a machine learning perspective
  Katrin Sophie Bohnsack, Thomas Villmann
• GrassSV – a hybrid tool for detecting Structural Variants
  Aleksandra Swiercz, Dominik Witczak, Krzysztof Sychla, Wojciech Frohmberg, Julia Wysocka, Jacek Blazewicz
• Assembly-free comparison of genomic data
  Artur Laskowski, Pawel Wojciechowski, Sylwester Swat, Jan Badura, Aleksandra Swiercz, Jacek Blazewicz
• Efficient Numerical Methods for the Solution and Parameter Estimation in Multiscale Models of Hepatitis C Viral Dynamics
  Danny Barash, Alexander Churkin, Vladimir Reinharz, Stephanie Lewkiewicz, Harel Dahari

MB-37: Graphs, networks and nets in Bioinformatics
Stream: OR in Computational Biology, Bioinformatics and Medicine
Room: Virtual Room 37
Chair(s): Agnieszka Rybarczyk

• Smart and Interpretable Neural Networks for Classification Learning in Bioinformatics
  Thomas Villmann, Marika Kaden
• Structural identification of metabolites from MS/MS spectra by molecular graphs
  Piotr Wawrzyniak, Piotr Formanowicz
• Building Hyper-heuristic using crowdsouring
  Jan Badura, Artur Laskowski, Szymon Wasik, Maciej Antczak
• The role of cholesterol metabolism in atherosclerosis development and progression – modeled and analyzed using Petri nets
  Agnieszka Rybarczyk, Dorota Formanowicz, Marcin Radom, Piotr Formanowicz

WC-27: OR in RNA modeling
Stream: OR in Computational Biology, Bioinformatics and Medicine
Room: Virtual Room 27
Chair(s): Maciej Antczak

• Graph algorithms to identify recurrent RNA 3D motifs
  Carlos Oliver, Jerome Waldispuhl, Vladimir Reinharz
• An algorithm to detect entanglements in 3D RNA models
  Marta Szachniuk, Mariusz Popenda, Tomasz Żok, Maciej Antczak, Joanna Sarzynska
• New algorithms for RNA pseudoknot order assignment
  Maciej Antczak, Tomasz Żok, Jan Badura, Mariusz Popenda, Marta Szachniuk
• Graph-based approach for quadruplex analysis
  Tomasz Żok, Mariusz Popenda, Marta Szachniuk